PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2365210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YB
Protein Properties Length: 135aa    MW: 15617.5 Da    PI: 6.9355
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2365210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.31.3e-5415110297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdr+lPianv+rimk++lP+nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal+tlGf+dy++p++ yl++yrele 
  Lj4g3v2365210.1  15 KEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYADPMRRYLHRYRELEV 108
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      ++
  Lj4g3v2365210.1 109 DR 110
                      87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-5110122IPR009072Histone-fold
SuperFamilySSF471131.71E-3817118IPR009072Histone-fold
PfamPF008082.7E-272084IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-174866No hitNo description
PROSITE patternPS0068505167IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-176785No hitNo description
PRINTSPR006151.1E-1786104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEDHIGSSSS NGGIKEQDRL LPIANVGRIM KQILPQNAKI SKESKETMQE CVSEFISFVT  60
SEASEKCRKE RRKTVNGDDI CWALGTLGFD DYADPMRRYL HRYRELEVDR THQERGNSPE  120
EKDELFKLSQ RGTRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B4e-4514105192Transcription factor HapC (Eurofung)
4g91_B4e-4514105192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617240.17e-77PREDICTED: nuclear transcription factor Y subunit B-5-like isoform X1
SwissprotO822487e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0B2QYD67e-77A0A0B2QYD6_GLYSO; Nuclear transcription factor Y subunit B-5
STRINGGLYMA07G37840.23e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-57nuclear factor Y, subunit B5